Scaffold Ga0211579_10001087

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10001087
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21034
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F015812	Metagenome / Metatranscriptome	252	Y
F031261	Metagenome	183	Y
F051470	Metagenome	144	N
F068823	Metagenome	124	N
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000108722	F102056	AGGAGG	MNKEFEKELITLLNKYYKSNWDYVWEFIGDSIETKLWLGEETTDEDN
Ga0211579_1000108724	F051470	AGGAGG	MSISNTQRNNFLHDFYDDKWKHYYKELRKDIKDNNQAEEIADRLAMEDVNNLEMEG
Ga0211579_1000108726	F068823	AGGAGG	MSRTYNDYYFEKLDVMDKLNEIGLLTRLLEVVYKEQGLDTIEYLVCNKTKRKFNWFNDEMMTDIINDINEGVSYEN
Ga0211579_1000108727	F031261	AGGAG	MRTKTYVMTVEKNSDEVLAQLNKLQQVRQSVSLLNKHSTKKHYVKCQGRWGRKNPDYNQRTIPFCPLDKAVKWDVYIYAR
Ga0211579_1000108728	F010318	GAGG	MNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGTSQEHEGNQGETDWKWSAQENILTEYWSLVEGLN
Ga0211579_1000108729	F015812	GGAGG	MMNKTLYKRLDEICAREHIVNKLSDNKYRTFVDLLYDDIRTWDEPMNVSEVDIIHRIGEHLSYMVSRSLADTYTGTNHD