Scaffold Ga0211579_10000626

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10000626
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28359
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (86.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F019158	Metagenome	231	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000062640	F057352	AGGAG	MKLWVLHGTYESEMFTSIHLTEKGCALAAIADVMDFFHIASEEDALQVMSECYAYRDSKEGEPTEAFEWDHDKLKEMTSKQLWKIFGDWTETCWERMSDRSYYIDATPQMVQA
Ga0211579_1000062641	F010950	N/A	MMNIWVVRQTCLYDNETYVSSHLTEKGALITAIKTVRSDVCDGFNEDEMDDYRPGLPHDPEEDLMQYDRKQLQGIVQDWWEYAWDANEEVQYQIYETRVEA
Ga0211579_1000062643	F079212	AGGAGG	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKTIKEREWCEECFDLEIKNENR
Ga0211579_1000062644	F070089	GAG	MKIGDLVKFESELVDDMDHHSAQYGLVMQLSKTGHDTTSVQVLFTDGDPWWVDSSRLVVVNESGR
Ga0211579_1000062653	F059942	GAGG	VKVGDLISFKPINFGLEEWSNPCIVMLEYDSPNEGLWSVWCDGVFCVIDDTNYEILHLTGSLLDETTKG
Ga0211579_1000062666	F019158	GGA	MKMTIVIDSEDTQGIDAALKMTRLMHDKYVGTGVSHKESFGKIEFIKMLRKFMKESVEHLNDEDSDQVKSLSDMGNLRNAKRFADRMFRGER