Scaffold Ga0211579_10000154

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10000154
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56057
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (70.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015795	Metagenome	252	Y
F017911	Metagenome	238	Y
F036469	Metagenome	170	Y
F050680	Metagenome	145	Y
F075345	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_1000015411	F050680	N/A	MPKIVEIKDKMGKPTLQEVISRLDLMFDNMVYRGEDKLNVVLASLSFCISQLSLEFGDKELSKLVDELLAQYIDKSANK
Ga0211579_1000015414	F015795	GGAG	MGRTNELYMMMRLAYEQAVDDYNNKKADTVLSAYKKYHIINVGMGSVDPQGEILNFFDEDNSQESMI
Ga0211579_1000015415	F075345	AGGAG	MSKKEVNVTEIIDEIISYTNPSKEDLEKQIEQDKINYLVWQCGVAIKELQSAVDELNKSKEAS
Ga0211579_1000015462	F017911	N/A	MYKRTKGYAMGGSVKGTKYMAKGGAAKGTKYMAKGGAMKGSKYMAKGGAMKGTKYMSKGGKV
Ga0211579_100001548	F036469	GGAG	MSTYYRPTEPIPLQAIKDSKYLAEDREFTVHNDRKMQYFCCEGSCIHYALDKQKNVIDLFRYGGNNADDILDPLSDEFEVDFISEHDEEYDDYCHPDTPVMQINIEDLKSISHD