NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10435380

Scaffold Ga0211614_10435380


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10435380 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)581
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000896Metagenome / Metatranscriptome845Y
F037233Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0211614_104353801F037233AGGAGMDELDNILSNIDLEEEKNEVKEDYADEWWCMDCEHGPMDEKDDKCTRCGKKNSQYGNDEITGWEDEDIESE
Ga0211614_104353802F000896N/AESERQTDRAGCGGEGRCNHTESECQRRVESKISKISEIQRFCTRGENVMTNKINLVINMSILALLIYLSVAVKQLQDKVFPDPNIMIPLMGQMDSKTDLEYNIRTLLNNALTKAIEEQEN

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