NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211614_10148335

Scaffold Ga0211614_10148335


Overview

Basic Information
Taxon OID3300020471 Open in IMG/M
Scaffold IDGa0211614_10148335 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_052
CoordinatesLat. (o)-16.9675Long. (o)53.9199Alt. (m)Depth (m)75
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F059364Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211614_101483351F000302AGGAGMVETMTQETKDRIKDLERQKIALEDRLEFLGYSTNLVKMHQIEQEIYEIED
Ga0211614_101483352F059364AGTAGMVKKLLISGCSYGVVYSDINNELKEIFKVDEIINLSQQGASPDRQIRVVIEWIAQNGNPDMVIMPVSHFNRFDLPIAGKFDPLHNLHYGSVWQMDPFARSESNINSLIDKDTLKTFLKTGAMINKIEHPAHDYLFVKLITFQAFLELNKIRHLIFDTGNYYEKLWMEYLSIDNEGNSGYQPGMKKRSLIENCKGIYKLFSFCSNVWMYEQLTDDEKKDYVPWDSQKPLKYPLSDFNEKATIHHQKEMVIKLMKHLKQEGAVYG
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