Scaffold Ga0211614_10126073

Overview

Basic Information

• Taxon OID: 3300020471
• Scaffold ID: Ga0211614_10126073
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1093
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006222	Metagenome / Metatranscriptome	378	Y
F039872	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211614_101260731	F006222	GGA	MPRIPTTINISNPKRYGYDLKLDDILLRTATSTQREMTIQSSDVEGGQVNVRQNAEDFTSNLGRVFSRNDF
Ga0211614_101260732	F039872	N/A	DMLSIEEEDALDKGTVIEINQELMICTDLNAVTNTITVKRGMKGTSAAAHTAGDLIKLSPPFPRKNVFDAVCDQIKNLFPTLFAVETQSITTGTGYTLLGSYDAPGTHNYIMSILGAISQYTDFSAGSDTTGVNFSPVTSSLIELPNPFTYTDSDGVSRTITYTTGPSVVHAIQFAGIASGHTAHVTFKKKFIEPTSESDTLSTIGLEDEYVPIIMAGVAAQMLAGRDIPSATTDYISQQLAVSNFPVGSANSVRNSLLQYQQLLMNQARKYLRAKYPEAVSVDGMVFGIQA