Scaffold Ga0211614_10062158

Overview

Basic Information

• Taxon OID: 3300020471
• Scaffold ID: Ga0211614_10062158
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1564
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038639	Metagenome	165	Y
F080023	Metagenome / Metatranscriptome	115	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211614_100621582	F038639	GAGG	MKYSKKQKSLSQPVIDLLSRMSKLVDQGLTPVEAVEWMTEVEPEWRCSRGYQATKGGLRQARQRLERRVEMMKQVNNGVTVFTNNKPNQ
Ga0211614_100621584	F082546	GAGG	MKIESKAIIRRRIANIERDIKSVRNSGNTFRMIILYRQLTANMIKLQNMKN
Ga0211614_100621586	F080023	AGGAG	MSKIFTIQIAPVRAPYMREKQRTVNTVCKKYVNGKVEYHEFRWNNPKAGRNIMWKDTPESQAEREQYAPKFAQRVQRAYDKAVIRFYTHYKGLRQEDEIVRVYAPYPDLAPNATITVYSARMHEYKAHQRFLEDIVSKMNIQFNTLMSLLQRGQFDLSKDSLYKLNKYM