Scaffold Ga0211614_10032405

Overview

Basic Information

• Taxon OID: 3300020471
• Scaffold ID: Ga0211614_10032405
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2177
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_052
• Coordinates
  • Lat. (^o): -16.9675
  • Long. (^o): 53.9199
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F014388	Metagenome / Metatranscriptome	263	N
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211614_100324052	F049045	GGAG	MKVSELKEYLSKFNDDEKITFYFLKNDTLTNCQVEDINSYGMGIEFTIQDTSELFEEANQ
Ga0211614_100324057	F004453	N/A	MLIDFTEYELETIANAMDDYINYDDEKLDTESLFGGLSVERRCLSIQNKIDTVFCKMRG
Ga0211614_100324058	F014388	GAGG	MSSLHHENILEECFEVASESFRINNKLTHEQLDELISFSKGTYDAICSNAYKLFQDRCQ
Ga0211614_100324059	F001993	N/A	MGILSLTSEQLRYKMKHLDALCPNRSVANDEQFHELYSKFRDLIEDTDYNIDIVDCLTALHCAMEDFEMYA