Scaffold Ga0211543_10004640

Overview

Basic Information

• Taxon OID: 3300020470
• Scaffold ID: Ga0211543_10004640
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8630
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (57.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005649	Metagenome / Metatranscriptome	394	Y
F012920	Metagenome	276	Y
F013575	Metagenome	270	Y
F064080	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_100046401	F005649	N/A	MIVMKKYGAERYRQMLFDKIVQQSLSKTREKRLNNLNSDKSLEGLVIDWHLANTEMGFDNFVEPVQNDQPTYAYA
Ga0211543_1000464014	F064080	GAGG	VNDFLHFIKHLLGLCGETSHPSLLISGGIFLTTFGLYWKKLIGYMKDLF
Ga0211543_1000464025	F012920	N/A	MNLKLLKEVREIKRKVSLPIVRKGSRGEIVPVHFTEREKTLLIEMLFRRSVKDPNKSPTHIFNPMKMHEERVKRGEGHNEKGQFRNSTQRKAMELIRKGKWVV
Ga0211543_100046404	F013575	GAGG	MEPVNLTWFYFHCVLALIIIVKDHNGTLEESLNKFESKIGLYTYVDTSHREEIDAPYYIPPISEEVDSTFILPDSLRRNK