Scaffold Ga0211543_10000803

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211543_10000803

Scaffold Ga0211543_10000803

Overview

Basic Information
Taxon OID	3300020470 Open in IMG/M
Scaffold ID	Ga0211543_10000803 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21197
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (87.88%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_041
Coordinates	Lat. (^o)	14.5375	Long. (^o)	70.0244	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037679	Metagenome	167	Y
F057749	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211543_1000080311	F037679	GGAGG	MATRIPKQRIKLGNSKHKRVERTTRGFGQRMHSRPMPAHIHLRAYTPEGELVGVAQRNDTFMVALFDHREKALAPPVVFHGAQARSQAASLASQLTGRKVSF
Ga0211543_100008038	F057749	AGGAG	LTRKHFQMIADVVKNIDDRDTRHSVAMDFAMRLKGENPRFNISRFVAACNSYATVEAVMADVRF

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