Scaffold Ga0211577_10017429

Overview

Basic Information

• Taxon OID: 3300020469
• Scaffold ID: Ga0211577_10017429
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5729
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_133
• Coordinates
  • Lat. (^o): 35.4068
  • Long. (^o): -127.7432
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074765	Metagenome	119	Y
F087049	Metagenome	110	Y
F087060	Metagenome	110	N
F092069	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211577_1001742911	F074765	GGAG	MPKTATLKETKITVSKLQHMLSYRGWISYNCELRKGRTCLASVSQEGNGGDERVAWNNIDHYLLLHHWILDTQMDFWREYEVDGINGQVELGYKTFKDGIKEKLELRKKYNLWEKLAKKKPEKWSDARKIQEQLGFFDDMVGAWTTVYVENKLGDKYYD
Ga0211577_1001742918	F087049	AGGAG	MNKDLARYINTLLAEKQREVLSKQAYLDKIDANFERHFTEHQEIVWELGMITKSQRAMDTIIEEEI
Ga0211577_100174292	F092069	N/A	MTTVVFEYNGKSKEIPINEIKSVNDVADAYAKLGLKTKQPIKRRLYYTLPNGKYHSFLSNKNHKYAVACTREDSRLGFCYTDDYAEAKTTAANWTNKFNNAREGFRRFVVVDVQEVK
Ga0211577_100174293	F087060	N/A	MTKSQTKSNDTSAKQVLRNIIGSTKRTVVTGDAPKTKKFDPVADQDDRLMKMVDLSLVIKDKRNEYDDLRKSFENDLKAALEDSEENPKIRHSENRRVHVYLSKRRVYKYSEKLTAKRLKLEAQLADLKDEESKEVRHGKATLTKQTFTVSFKG