NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211577_10000121

Scaffold Ga0211577_10000121


Overview

Basic Information
Taxon OID3300020469 Open in IMG/M
Scaffold IDGa0211577_10000121 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74185
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (21.52%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_133
CoordinatesLat. (o)35.4068Long. (o)-127.7432Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030109Metagenome / Metatranscriptome186Y
F100947Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211577_1000012112F100947N/AMDKLYFIFETSQSLSDTGIGSITEQKVSESNDVYRNRINWCAKKSVSENCRYQIISESQFPPDFDNYAWDYTNNDGIGLQNSFTQSWDEFLTENTSL
Ga0211577_1000012146F030109AGAAGMSYIKAHLPERYQLKEQIESDRDMWIKYYAKYGAFIGSSEAVDYLTKEIEKYYDSKNN

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