Scaffold Ga0211713_10133887

Overview

Basic Information

• Taxon OID: 3300020467
• Scaffold ID: Ga0211713_10133887
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1196
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.1569
  • Long. (^o): -129.5943
  • Depth (m): 155

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034143	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211713_101338872	F034143	N/A	MHSVDLNYDPWQYLTVDNFLSPDRWEEFQRLADIEMKAYHERDGLTPSGKWIRWVDEDILPESNVLHKEMKRFREPPKNVKKIMHWAVCPPNYTMPMHCDYSARFFTAVYYINPVKSYGTILCKNDSEYSDIGKSRNTSFDTNEYEIEVPWKQNKIFCFNNLPKAWHYYKAGAEPRIIIQSFFVDLDKMVEGKEDWDHLIDIDPKYYT