Scaffold Ga0211640_10181687

Overview

Basic Information

• Taxon OID: 3300020465
• Scaffold ID: Ga0211640_10181687
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000579 (ERX556060-ERR598961)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1191
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9687
  • Long. (^o): -100.7324
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F074026	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211640_101816871	F074026	N/A	KLDFKPNFRRISIYTYHPKWIPMPDGAEPIGYEVAYQLSREFKRDMYEKMDSQKNAYVDVVRP
Ga0211640_101816872	F004336	GAG	MRFIRNMLFGTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCMWLIGLGFAFGGVGLYVGYYYETVVADYGMAIWGVAWLYNGFLMFVLAVSIVLSTLKALIVKAFVSPEVQVGQAATRTAQMMRKGGL
Ga0211640_101816873	F006818	AGGAGG	MAGPPQMTTLARTSHKQAQPDEPKREVAPAPNVLTRAPVSQQLMPSAETMSDDELDLYVKRLTMRHKRLSRKWWGLRRKHGKDECPYCGMATGGGFCKLHQRDYDEYLSALSTRQNRSFG