Basic Information | |
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Taxon OID | 3300020463 Open in IMG/M |
Scaffold ID | Ga0211676_10074467 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2311 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_094 | |||||||
Coordinates | Lat. (o) | -32.7806 | Long. (o) | -87.0917 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002747 | Metagenome / Metatranscriptome | 533 | Y |
F006347 | Metagenome / Metatranscriptome | 375 | Y |
F024562 | Metagenome / Metatranscriptome | 205 | N |
F076487 | Metagenome | 118 | Y |
F086185 | Metagenome / Metatranscriptome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211676_100744671 | F086185 | GGAG | MMEPDMITLDDLLEILSTDLTQAEIEAFLFEWGVA |
Ga0211676_100744672 | F024562 | AGG | MAIIYEKNFTDPNEKIVRQFTNCCGASDKGTEFGVVCRGCYDPIEGYVTDGDDSPKEFENYIHNDSVLKRFRTFVNENFLNYEEWHEHIINKMGV |
Ga0211676_100744673 | F002747 | AGG | MAKDQRFYVNACIEIYVPDQGYGGKSMKNEQTDAEWFANEISSQIPKAINKNFKFSERPYSVNDVMVGKVERG |
Ga0211676_100744674 | F006347 | AGGAGG | MVDRIKQLLNELEQEINDGYNTLPDYQTNDEGKTYINGAQCTLNELQNQVTELEQGLRLGKNFSLLGKGLNNG |
Ga0211676_100744675 | F076487 | AGGA | MTIYGKTLELNENTNDALYNLYEMKRETLAFNEGGNKYGYENLLDDTDFFTPEDFTDTYNVKGYTDEQVLEILGGFIQW |
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