Scaffold Ga0211676_10074467

Overview

Basic Information

• Taxon OID: 3300020463
• Scaffold ID: Ga0211676_10074467
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2311
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_094
• Coordinates
  • Lat. (^o): -32.7806
  • Long. (^o): -87.0917
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F024562	Metagenome / Metatranscriptome	205	N
F076487	Metagenome	118	Y
F086185	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211676_100744671	F086185	GGAG	MMEPDMITLDDLLEILSTDLTQAEIEAFLFEWGVA
Ga0211676_100744672	F024562	AGG	MAIIYEKNFTDPNEKIVRQFTNCCGASDKGTEFGVVCRGCYDPIEGYVTDGDDSPKEFENYIHNDSVLKRFRTFVNENFLNYEEWHEHIINKMGV
Ga0211676_100744673	F002747	AGG	MAKDQRFYVNACIEIYVPDQGYGGKSMKNEQTDAEWFANEISSQIPKAINKNFKFSERPYSVNDVMVGKVERG
Ga0211676_100744674	F006347	AGGAGG	MVDRIKQLLNELEQEINDGYNTLPDYQTNDEGKTYINGAQCTLNELQNQVTELEQGLRLGKNFSLLGKGLNNG
Ga0211676_100744675	F076487	AGGA	MTIYGKTLELNENTNDALYNLYEMKRETLAFNEGGNKYGYENLLDDTDFFTPEDFTDTYNVKGYTDEQVLEILGGFIQW