Scaffold Ga0211546_10165075

Overview

Basic Information

• Taxon OID: 3300020462
• Scaffold ID: Ga0211546_10165075
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1095
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC121P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.2108
  • Long. (^o): -28.7989
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002613	Metagenome / Metatranscriptome	543	Y
F004220	Metagenome	448	Y
F026714	Metagenome	197	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211546_101650751	F004220	N/A	YVMVEKDKLDWCYYFKSIKSWIRVCSKDMNEGFSVFTRQTRVKDHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKENNQWKQL
Ga0211546_101650752	F026714	AGGAG	MASTYKKLTVYLNEEQEKVLTDFDLKIIDKDDFDLLHYTVGIISKRLAETNHKMITDVDPNTCDPTILQYSSKTIG
Ga0211546_101650753	F056144	GGAG	MVKNIYRGYDIVEYDTQWKVELDNKVISTFDKVEGVSGEASCMCEIDRIYRNDRKEIDANIQRVDAQVKLDNKIKKARNIC
Ga0211546_101650754	F002613	GAGG	MLRAIWFALHFAIIMIGAIITIHFDVWLGLAIMLVFAVKFAFMIPNTEEL