Scaffold Ga0211546_10121523

Overview

Basic Information

• Taxon OID: 3300020462
• Scaffold ID: Ga0211546_10121523
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1286
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_151
• Coordinates
  • Lat. (^o): 36.2108
  • Long. (^o): -28.7989
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012114	Metagenome	283	Y
F018906	Metagenome	232	Y
F019646	Metagenome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211546_101215231	F018906	AGGAG	MKTCKVNPLKLNETRFEAEAHKKAGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEIAVLKYPLGTDPEIMSKIIYDQPINEHLGIVDVAGWLDFFEVADILQKIRNYNTGEYAYNE
Ga0211546_101215233	F012114	N/A	MPKVRKNVWVVYDTQGNRIGEVGAMSETEARQKVALHVMIPFRLSHIEE
Ga0211546_101215234	F019646	N/A	KMSNNNQNFEIHYTSDCCGAYVHSDAELCPTCLEHCEVIEDRVDFDCSEAVHFQASLDYYGAG