Scaffold Ga0211486_10160024

Overview

Basic Information

• Taxon OID: 3300020460
• Scaffold ID: Ga0211486_10160024
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 991
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4217
  • Long. (^o): 37.2517
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019229	Metagenome / Metatranscriptome	231	Y
F105867	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211486_101600242	F019229	AGGA	MKEKKYKQCDQSDGSVVSKLSEKPTLVKKGIRTYHGIVEDSFENKKENYDEVCHTEDRRIVNAAIALRSRLSTKEREEAQEWHRNFSALVGEWMC
Ga0211486_101600244	F105867	AGGAGG	MTFSERERFIYHTATLMTMQHLRALSKSDLQRSLKAVQNNRCTSLTDKQVEEIFLDVEYETSAMIRNAQEKLEKSCKKRQGYKKREFAE