Scaffold Ga0211551_10001630

Overview

Basic Information

• Taxon OID: 3300020456
• Scaffold ID: Ga0211551_10001630
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11950
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_148
• Coordinates
  • Lat. (^o): 31.8366
  • Long. (^o): -64.109
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013230	Metagenome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211551_100016306	F013230	GAG	MALFQRKDLPKSKYIVSIVAKIKKGTPIKVEGGKSYKFKKTKDIDMLEKAQTNFQKYSKILDPNGKFAPIFTDGKKYFTFTEIDKAPFSGKGGGSRNVLGKALADAGELATVMSLSKKIETAKDTKEPIFEKNPDAFDDWYNTFQLTKPAVVKIVGSLTNYEIIHDATDKSDFTSTIDKFVKKANLSKKDSWNPADIFVINKSKRKSVTDDLKKIVDTYDVSEGLVNMFNDKIYKLYEKKIMYPISLKQITADKANVDKNNIPGTVKVANFNIEIAKFNCNLTSEGKEIGLFTFNNTDTRKQINMQVRGFPHSYGVAQTEITSDGTPTGGRLGKVSTKVVDNIMGLYKDARINSIRYFGTPKPFSDFDENKCKEVYGMYETVIKESKVKNEKNISYKEFKKLIEVAKSKRSIAENMVMKIQGLKIMHFFVKNKKDLSTIMNKMINGAKKINPNNGFFIKIY