Scaffold Ga0211664_10134372

Overview

Basic Information

• Taxon OID: 3300020455
• Scaffold ID: Ga0211664_10134372
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000965 (ERX555917-ERR599081)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1158
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9226
  • Long. (^o): -96.0932
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F028358	Metagenome / Metatranscriptome	192	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211664_101343721	F028358	N/A	ALKRMYDNHAPMNQPVLAVSPKQLLDLNNELVKGTVDIAGAIIPRDRNVAGIDVDTIVTPFGSIGMMVVDPDILPDNTAFILDLAYIQPVFTNIPGYGTVFVRDLDQDANARIGKAIYMEMGFEYGPPSYHCKIQAVS
Ga0211664_101343722	F003693	GAGG	MIKSKQALIDISADNNDSLGVQAEGMLLCGVQFPAAMTGTAITFDFSLDNSTWVDVKETDGTEVSYTVSAGDVVRVDPSGWAFASNGYLRVSSNGTEAADRAIILHFRHS
Ga0211664_101343723	F092017	AGGAG	MGMLLILKEGRNLDIESIPDQPLETSFPIVNPTIKANDGLFALGAFGQAIFAAELVEEGA