NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211548_10258884

Scaffold Ga0211548_10258884


Overview

Basic Information
Taxon OID3300020454 Open in IMG/M
Scaffold IDGa0211548_10258884 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.8591Long. (o)-37.1728Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044553Metagenome / Metatranscriptome154N
F061282Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0211548_102588841F061282N/AGGIATRGMPLGKPPKGMVMKRFAGADVFSVTPSLYHKSRLGKKKYTRYSNYVGEDEVGQYIRAYARKYPKKPIIVMDSDTGCMQYLRHGKK
Ga0211548_102588843F044553GGAGMPEQESILQLKSEIQTLKIKDEYRSKELDALMVKLSDTSTKLNALSENIGRLLAAQDVNKMTDKEFREEMKILHTRIGDLQDKMNTMIDKTETRMNTDINLI

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