Scaffold Ga0211548_10102564

Overview

Basic Information

• Taxon OID: 3300020454
• Scaffold ID: Ga0211548_10102564
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1367
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.8591
  • Long. (^o): -37.1728
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019665	Metagenome / Metatranscriptome	228	Y
F019666	Metagenome / Metatranscriptome	228	Y
F021511	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211548_101025642	F019666	GGAG	MPHIYIPEMFVTQDEYDMIHNNLVPIDTFVANKIRQDDMFVYIQSSDCTYKRAKNYEWCEELDARVLSENPDKRSTICDI
Ga0211548_101025643	F019665	GGAGG	MPFYTYIDDKDMIPYLLDYGWMVSHNTWTDCPLPTYTAMKKAYQHNGNAMIFGEMM
Ga0211548_101025644	F021511	GGAG	MQDYTNDAVKAIMAAYTPVEVKTLLHNHDERNFVHHQTTDEIVDFYADHNEDIHHWLLDDSHAFEYYAECMAAYNKAQATCKCEHERFEVQNAYLKDVVYIFIATICYDLAASHDMLDMSMSEVEDYQLAKELQHAKTKLTVIDGGKK