Scaffold Ga0211545_10026238

Overview

Basic Information

• Taxon OID: 3300020452
• Scaffold ID: Ga0211545_10026238
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2912
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.6906
  • Long. (^o): -16.8555
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017325	Metagenome / Metatranscriptome	241	Y
F019665	Metagenome / Metatranscriptome	228	Y
F019666	Metagenome / Metatranscriptome	228	Y
F021511	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211545_100262383	F021511	AGGAG	MQDYTNDAVKAVMSNYSPIEVKRLLHNHDESMFVHHQTSKSIIDFYAEHNEDIHHWLLDDSHAFEYYANAMAAYNAAQAQCTSEKQRHQVQNVYLKDVVYIFIATVAYDLAASHDMLDMTMQEVEDWQLAKDLEMQKTKLQLIQGGKA
Ga0211545_100262384	F019665	AGGAGG	MPFNTYIDDKDMIPYLLDYGWIVSHNTWTDCPVPTYTAMKKTFQHNGNAMLFGEMM
Ga0211545_100262385	F019666	AGGAG	MPHIYIPEIFISSEEYDMIQDNQVPIDAYVANKIREDHMFVYIQNSDCTYQRAKNYSWCPELESRVLSENPDKRSTICDI
Ga0211545_100262387	F017325	N/A	MQDYFDEVYKALREFHAHEDNQLKPLYMLIKVDVDKDIVHNQCQAGKYAINHCNSMEYELADWYYPDEEQYPYIAK