Scaffold Ga0211473_10343629

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10343629
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 765
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019643	Metagenome / Metatranscriptome	228	Y
F060890	Metagenome	132	Y
F090247	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_103436291	F090247	N/A	WRSDLPKLVVLGKDRYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0211473_103436292	F019643	AGGAG	MAKYYIKSGTLEIIFSTKKRDYDACRRVIHECNSNDELDEYMYCDERGYRDYTNADQTTTVVPTEDILRKEGYIK
Ga0211473_103436293	F060890	AGGA	MNDSMKLTKHDYEMLADIADAHYEDTVELQKNHYLNDDTDYFKQLEYLEELIDKTVYMIGVLSADE