Scaffold Ga0211473_10161338

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10161338
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1154
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017050	Metagenome / Metatranscriptome	243	N
F073156	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_101613381	F073156	N/A	MIILGCITKYKPEDIRPFVESIEETGYKGKKIMMVYEVPQETIDYLKSKGWDLYQNELQQHIILQRFRDIYKLLEQFPNEDVIWCDVKDVIFQTDPTD
Ga0211473_101613382	F017050	GGAGG	MSKLISGYLWAWTEWEAGKKSMQTLKKFYPDADLFINVDYDGDVENYTKVGEEIGATVTRNNFQVGYPGNFGDRDIGYEHWTKEKAVEWLRGIYDACKKTDSKYIMLFEEDDFVLKPISILNEEFSMAIHPTLPSPTGRMRGNYIPHQFFEYSKHVGGVDNCPGYASGGGTIFNRLQYMDSYEKALGFYLEHFDDFCKINKIYGWQDFLFQYVMMLAGYEIIQNTKLCEHWEVPNYDDFEILTACKDHNLIKL