NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211473_10000477

Scaffold Ga0211473_10000477


Overview

Basic Information
Taxon OID3300020451 Open in IMG/M
Scaffold IDGa0211473_10000477 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21187
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_150
CoordinatesLat. (o)35.7956Long. (o)-37.0998Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007343Metagenome353Y
F033836Metagenome176Y
F038272Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0211473_100004772F033836GGAMTISEYEFFGVSNNANAKNTRSTVGKGVPTIREQEERTNKEERYIDMVRETEVKAAALCTLALLAGLCCALLLGCSTSAKVEGGAEIIELKPLKMQELTYPIHDYSKIC
Ga0211473_100004775F007343GGAMRVSELQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNERYSHWMVPSFAEGRAAYCEAKQRFCEQHGSE
Ga0211473_100004776F038272AGGAMTRNEAKLELFKVNRNIEKMVVAHANELGQFNKNCLVNDLQRLWDKKKTLQNTING

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