Scaffold Ga0211473_10000035

Overview

Basic Information

• Taxon OID: 3300020451
• Scaffold ID: Ga0211473_10000035
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001778 (ERX555927-ERR598996)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74745
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (15.58%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_150
• Coordinates
  • Lat. (^o): 35.7956
  • Long. (^o): -37.0998
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016003	Metagenome / Metatranscriptome	250	Y
F033951	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211473_1000003561	F033951	N/A	MNKLYILLACCCCSSSAGAGAFFGGFIPNTSQYVLKKMKKLIQIVIALDATPESCENLYKYMKETKGTSAAESVSQSLSENEKTILERVYDIGRGIEPEKICDKSSIDSSIALFKNVQNAPEGEDVSVYCNNLKDIGNENKDKKRPIYYWDESKKEFIRDGEYFSNAFGGRSGPELEGPVIAKCEAVGINIR
Ga0211473_1000003564	F016003	N/A	MKSIWKACENGELDELKKRRNEINEIIEELPKDGDDLREDEDDISFAIAFCKDHDTALEMYKYLYEECGYPRHCKYYAMIGAAASRNAKLINYMYNNLEENEKSYFLGELEDELAMTDHPNPSVFIEYALVELKK