Scaffold Ga0211641_10313540

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211641_10313540

Scaffold Ga0211641_10313540

Overview

Basic Information
Taxon OID	3300020450 Open in IMG/M
Scaffold ID	Ga0211641_10313540 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	765
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_111
Coordinates	Lat. (^o)	-16.9554	Long. (^o)	-100.6925	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009959	Metagenome / Metatranscriptome	310	Y
F033810	Metagenome / Metatranscriptome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_103135403	F009959	N/A	MTKEEVIERVLDRMTTTMYNELDYYMFEELGYTETNDKYVEDADELINKIIKNIQQWQI
Ga0211641_103135404	F033810	N/A	MSKSKQIYWNPDTIDHFIFISNYADVDQVLTQVEQFVSIDCELQGNDTEKDLVEDLMNKIYERRYD

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