Scaffold Ga0211641_10002734

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10002734
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11389
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F039872	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_100027346	F003693	AGG	MIKSKQALIDISADNSNSLGVQAEGMLLCGIQFPAAMTGSNISFDFALDNSTWVDVKETDGTDVTYTVSAGDIVRVDPSGWAFASNGYIRITSDGNEAADRKIILHFRHS
Ga0211641_100027347	F039872	AGGAG	MSNIGNLVDRTFREYLEPMDDLVSYTTLSTGVNDSVADIVFDGDMLSIEEEDALDKGTIVEINQELMICTDLNAVTNTITVKRGMKGTSAAAHTAGDLIKISPPFPRKNVFDAVCDQIKNLFPTLFAVETQSITTGTGYTLLGSYNAPGTHNYIMSILGAISQYTDFSAGSDTTGVNFSPVTSSLIELPNPFTYTDSDGVSRTITYTTGPSVVHAIQFAGIASGHTAHVTFKKKFIEPTSESDTLSTIGLEDEYVPIIMAGVAAQMLAGRDIPSATTDYISQQLAVSNFPVGSANSVRNSLLQYQQLLMNQARKYLRAKYPEAVSVDGMVFGIQA