Scaffold Ga0211641_10000826

Overview

Basic Information

• Taxon OID: 3300020450
• Scaffold ID: Ga0211641_10000826
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000575 (ERX555933-ERR599077)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21683
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (73.17%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Associated Families: 15

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_111
• Coordinates
  • Lat. (^o): -16.9554
  • Long. (^o): -100.6925
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004629	Metagenome	430	Y
F004990	Metagenome	416	Y
F005038	Metagenome / Metatranscriptome	414	Y
F005431	Metagenome / Metatranscriptome	401	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F013234	Metagenome	273	N
F016879	Metagenome	244	Y
F017558	Metagenome / Metatranscriptome	240	Y
F026711	Metagenome	197	Y
F058519	Metagenome	135	N
F059875	Metagenome	133	Y
F099988	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211641_1000082615	F005431	AGGA	MMEFDDEQKGYSAVIYIMESSKSVVVHFGGFNNLHECRYFSHHIMEDFGIEQLLNVPQGVTVH
Ga0211641_1000082616	F013234	N/A	MANIRYSKAMEKIILNRLMEGESIRSITRDPEMVSWATFSQKLKDSEKLQDAYFQAKKIGIEMVIAMAQDKLTEGIATLENGGKMDNSLPFAHLIKEMQSNAKWLSSVLSPIRYNKDTKLSLNGGDKPIQIKWEQ
Ga0211641_1000082619	F099988	GAGG	MKTEFILYGLKLNEPDYLESIIHTSFNRNEIDKVKTLAIKKGYVKFRVATFNGEAPNFADPKLINV
Ga0211641_1000082621	F005038	N/A	MKAKDINIYNLFSETYKKRKMFSFIGFGELLQMPKVDKPIRQISNVYQFPIKQYYNQKRRVK
Ga0211641_1000082622	F026711	AGGAGG	MSNKITQYDAQMIADWFNGSNLVHSSIASNKQIKKLFEQSEKLRVKAHKIIVDDATWKFEFKRGNQRKLKVKYNYEKKQ
Ga0211641_1000082624	F004629	AGGA	MIPNKLTVDELDNMFQTATYVERYMPSPLNIKNKRTEMFTLIERLYGIGKDKKDYISNDKPKIKIRLNGEQLQTYEFCILLLVKANEKDRDIISLRNFPYKRSFRQLKRFFMPVSHEQVRIKYYNALYELLKLYHLKGRAYFLK
Ga0211641_1000082625	F011253	AGG	MKDRKLEINNIIKNIVKNKSIPYVNAISKIKQDRKGYFQQKEIKNKQKSLSTDRFQQYLKEIAENDTE
Ga0211641_1000082626	F001839	GGA	MKYFEKINKDLLNNRFLNSHEKLIFIICKSFENAPRGARVSHKYLMQRTGIKTKKTLIKCLDNLSLYGLMARKQIGQGTCHYVFDKKTMQEYIRHNINKRKKISLRKNRQFKSYINNLKDPQVINIGDFIKE
Ga0211641_1000082628	F004990	GGA	MYGDPKKPCKICGEGADIKEGSIYYCCDHYALYVLGKSMSQIEKELNND
Ga0211641_1000082629	F008915	AGGGGG	MNNEITLDLYEMQSASHLGILRCLESIKNKESWGHNYKGTLNDQIAKSISGAMGEVAASKFLNIKFEYHANVGGVPDLIFKDLRLQVRTQLKKNKNTLIIRPKAKSNELYILVVDEAPKFKILGFINSNYVLGKSKFKTNFGLDRPFCYSIPPEKLTPIELLKNGTWN
Ga0211641_1000082630	F059875	N/A	MKTLVLIFGVITNDGQIELVKVPNIELKNINSCEKAIEINRKWVDNPDFEKNDMPFGFYTYKNRPIMLQYCVLKGVENE
Ga0211641_1000082631	F058519	N/A	MVNHLKIIGEAYEKFNDTNTSVSANKEPHSLRAMKRYFLTKEQAKKCNNASLEAGTIGHKIVEICLNKNLTIDEVFASDEIQKKIDAYFPIDKTDEMKFKFAIKFLPQTAQNHLENFKELPKQTWKTEVEFIKWIDPVNVPFRMFCDVVGSKSVVDIKYKLPGVKFSPLKTKQTKENPNRIDDWTCSHPKLDARVFTSDLMQIALYSHTTGLKPSLSYASANERILFTEDNCEELKPENLKLWLNELIAYEIAWEKKLKAANGSVTELLWLNIPDFSDIRKKSFWWNSIPKEYMENYLKTYVXYGNYKTFKR
Ga0211641_1000082632	F006892	N/A	MSDMGIIKPLRDRVRDLEEINLAHQKKNGQLRQEIQDKNKLIEELTEKINNPTKKMREQGELXKKEI
Ga0211641_1000082637	F016879	AGCAG	MSVFKESFFEASFKTIEEFDNAEVASAKSNVSEDADLKIIDIKLNKSLIKTNNDKEHDNATDKQHSKIVSET
Ga0211641_1000082640	F017558	N/A	MFFIIYKNKNNILTSYTNTLFSTEAEATDYAKRSLKKKDVWQVVRYDSENYDKYWYKT