NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211642_10047424

Scaffold Ga0211642_10047424


Overview

Basic Information
Taxon OID3300020449 Open in IMG/M
Scaffold IDGa0211642_10047424 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1890
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_110
CoordinatesLat. (o)-1.8191Long. (o)-84.6284Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012465Metagenome / Metatranscriptome280Y
F064816Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0211642_100474241F012465AGGMKTYKEFRKSIGFPVKERKVEEVIRSEKPLTEDVVDQLRSVVKKKKEADIKFKSGTSVPIDPESANIILKTFDTLNSSKKKKMQDNMNKDTKSFLKILDFAFSNAK
Ga0211642_100474243F064816GGAGMAEQAVQQNFKTVDIIDYSMKSSPTQVHDAFDQIITSKVIDGLETRKREVSARMFSDKEEIPVEEPEVGIQAEPELETTETQ

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