Scaffold Ga0211638_10044574

Overview

Basic Information

• Taxon OID: 3300020448
• Scaffold ID: Ga0211638_10044574
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1928
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.24
  • Long. (^o): -129.4851
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019665	Metagenome / Metatranscriptome	228	Y
F019666	Metagenome / Metatranscriptome	228	Y
F021511	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211638_100445742	F021511	AGGAG	MQDYTNDAVKAIMAAYTPIEVKTLLHDHDEKNFVHHQTTEDIVEFYGKHNEDIHHWLLDDSHAFEYYWKCQAAYNVAQADCTSEKERFQVQNEYLKDVVYIFIATVCYDLAASHDLLDKSMQEVEDYQLAKDLEHAKTKLTVIDGGKK
Ga0211638_100445744	F019665	AGGAGG	MPFNTYIDDKDMIPILLDYDWMIWKNTWTDCPYPTYKSIKKAYQHNGNATLFGELM
Ga0211638_100445745	F019666	GGAG	MPHIYIPETYISQDDYDMIQDNSIPIDAFVAARIRNDEMFVYVQETDAKYKRAQNYEWNDELQARVISDYFCGNPNKRSTISEI