Scaffold Ga0211638_10014225

Overview

Basic Information

• Taxon OID: 3300020448
• Scaffold ID: Ga0211638_10014225
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3354
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_112
• Coordinates
  • Lat. (^o): -23.24
  • Long. (^o): -129.4851
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017325	Metagenome / Metatranscriptome	241	Y
F021559	Metagenome / Metatranscriptome	218	Y
F049704	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211638_100142252	F049704	N/A	MTDHYYYYEAMLGTGKKIHLFARDDIEAAYRATHIAKWHWNTTLTDIYLDKYHHYNTERHEKERVSKQLQHDS
Ga0211638_100142253	F017325	N/A	MKDYFDEMYKAITDFHPQGIKPLYMLIKVDVDAGIVYDQCEADKYATNHCNKMEYELVDHYYPDDIQYPYIAK
Ga0211638_100142259	F021559	GGAG	MTNHAPIDQPILEILNTYNPLEIKDILINGARRKATKHKDWDNVLAYYQDWDGYMHHYLLDSPDAWIHYAMCQKAYTMTDHTPADQKEYIKDVFYLYLDTLADDIGHKWDLHSRPRKQIEDEVLAIELKIRKESLGVIDGGKA