NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211638_10014225

Scaffold Ga0211638_10014225


Overview

Basic Information
Taxon OID3300020448 Open in IMG/M
Scaffold IDGa0211638_10014225 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3354
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.24Long. (o)-129.4851Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017325Metagenome / Metatranscriptome241Y
F021559Metagenome / Metatranscriptome218Y
F049704Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0211638_100142252F049704N/AMTDHYYYYEAMLGTGKKIHLFARDDIEAAYRATHIAKWHWNTTLTDIYLDKYHHYNTERHEKERVSKQLQHDS
Ga0211638_100142253F017325N/AMKDYFDEMYKAITDFHPQGIKPLYMLIKVDVDAGIVYDQCEADKYATNHCNKMEYELVDHYYPDDIQYPYIAK
Ga0211638_100142259F021559GGAGMTNHAPIDQPILEILNTYNPLEIKDILINGARRKATKHKDWDNVLAYYQDWDGYMHHYLLDSPDAWIHYAMCQKAYTMTDHTPADQKEYIKDVFYLYLDTLADDIGHKWDLHSRPRKQIEDEVLAIELKIRKESLGVIDGGKA

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