NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211638_10010472

Scaffold Ga0211638_10010472


Overview

Basic Information
Taxon OID3300020448 Open in IMG/M
Scaffold IDGa0211638_10010472 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3908
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_112
CoordinatesLat. (o)-23.24Long. (o)-129.4851Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005547Metagenome397Y
F010950Metagenome297Y
F018286Metagenome236Y
F059942Metagenome133Y
F067640Metagenome125Y
F079212Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0211638_100104721F067640AGGAGGMIEVGSLLKMRGNQTTWLALDEIAGTVLVVSQKTNHKMWATKSAFEVIG
Ga0211638_1001047214F059942GAGGVKVGDLISFKPINFGLEDWSNPSIVMHEYESPNEGLWTVWCDGVFCVIDDKNYEIIYLTKDREADIL
Ga0211638_100104722F005547GAGGMMKVWVMQGSYEAQLFSSVHLTEKGCALACVADLLEFLGVDSEKEALEVMNDVYSYSETDGEQTEAFEWDQEKMKNMTSKELWKIFQDWCEISWDRMSDRSYYIDGVPMEIQA
Ga0211638_100104723F010950GGAGMMNIWVVRETCLYDHQSYVTTHLTEKGALITAIKTVREALCDGFDGDELQDIRAGMPHNHDEDLMQYSSEQLRGIVQDWWEYAFEMNEHAQYQIYETQVEA
Ga0211638_100104724F018286AGGTGGVTVLTTFILLGMVDSHDEHFATVELNTNPASNGGPATAVMPVNAFPCEIYEGKVFYVVKLHDNQDAVIICQEDAKSGRESKRTD
Ga0211638_100104725F079212GAGGVDENQKELIDRCIESHYNMIKYHRRAIIELSRKMLKEPEVCKECFDFEIINESR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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