Scaffold Ga0211574_10044428

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211574_10044428

Scaffold Ga0211574_10044428

Overview

Basic Information
Taxon OID	3300020446 Open in IMG/M
Scaffold ID	Ga0211574_10044428 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2016
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_137
Coordinates	Lat. (^o)	14.2017	Long. (^o)	-116.6336	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042934	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211574_100444286	F042934	AGGAG	MKSTLNSKDYVTFTRRFVKETVDTMDIKELKDFVINALHEDIQDVYDDLGQRGAFDDMLSWDEDTFFTVAEEFELELEGVE

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