NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211564_10018362

Scaffold Ga0211564_10018362


Overview

Basic Information
Taxon OID3300020445 Open in IMG/M
Scaffold IDGa0211564_10018362 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3476
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3354Long. (o)-103.0345Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025395Metagenome / Metatranscriptome202Y
F027994Metagenome193Y
F031250Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0211564_100183622F031250AGGAGMEGIYNKENLFAEFKMQKTNEDKVKFLKEMKELKKTQPHMFRGTSITQKNFDNLIAEWSKDQPWVEINREIKRRLKIANSAEGEDVSL
Ga0211564_100183624F027994GGAGGMTFHLIYSRHNHDREDYGTFMSSFTLYRNVPYSELDKMKKAIPSLLKNADEVYAEYQKKNYPNADESQCYHTEVWICDDSDYFKTYKDKYPDTYQLPPGLIPQEEDYYHSYGQKNNFMLLKDFNQHYTWFAKDFTQKQIDELHEDNSKGKDIHAYWRQQYKLWKEAA
Ga0211564_100183626F025395N/AMTLQQIYDKFYSLKTSSDKLVFIDELKTLTKNKVINFDLNFSSIEEEIMNEE
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