NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211564_10001606

Scaffold Ga0211564_10001606


Overview

Basic Information
Taxon OID3300020445 Open in IMG/M
Scaffold IDGa0211564_10001606 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11503
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_138
CoordinatesLat. (o)6.3354Long. (o)-103.0345Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017050Metagenome / Metatranscriptome243N
F030730Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0211564_1000160612F030730N/AMGKLKEKIIEKGAGLIVKNKTKKNLEKILPTPLAKQISKKVGKATEKITSTAIDLWNKFK
Ga0211564_100016066F017050N/AMSKLISGYWWAWKETEAGKKSMQTLRKFYPDSDLFINVDYEGDVEGYQKVGEELGATVTRNNFQLGYCGNFGDRDIGYDHWTKEKAVEWLRGVYEACKKTDSKYMMLFEEDDFVLKPISILNEEFSMAIHPTAPSPTGRMRANAIPYQFKQYAESVGGIGDSPGYASGGGTIFNRVQFIDSYERALDLYTKHFDEFCKTSKIYGWQDFLFQYVMQLAGYKIIQNPKLCELWEVPNFEGFEILTGCKQPELVEL
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