NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211578_10034471

Scaffold Ga0211578_10034471


Overview

Basic Information
Taxon OID3300020444 Open in IMG/M
Scaffold IDGa0211578_10034471 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1927
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_132
CoordinatesLat. (o)31.5319Long. (o)-159.0668Alt. (m)Depth (m)550
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F002150Metagenome589Y
F021554Metagenome / Metatranscriptome218N

Sequences

Protein IDFamilyRBSSequence
Ga0211578_100344711F002100AGGGGGMSFKPALIKPTYDVANYGHDTSLPLNCISGNVATITPSTSTFVQVLEDSRVPIDEVDLFITDSDKMALIHPGNDTDFDTSWEWAPDMSAQAYTLTFNFAVGMKVSSYTSGNFKIDSVQVICNQIGGGEGTVNFVNKIIDPGMSNMTSAVAQVAIINFSTTVSTKVFDKPLTFQIKVNTSSGSGTYQTGIIPLFCYFGTAIPKTWTTSSVLMHLHADLAHAFPIFRDEDNMNMVDTGIGL
Ga0211578_100344712F021554N/AMILEEIPFFVEFVITGIVLGFGYGFTKLFLNHAKDKSKIRKSERKAQQSHNLEDEMDKYLDNSASIVAHLESEITNLKSQGATPEQTKRMEGELNLAKKVQQYEPIIRIIGKPMLKKVMSVIDRV
Ga0211578_100344713F002150AGGLVSPIPAMVGIKAKKVTGQVSEELYGYDFVNLVSKLAVFYVIAFLISKYMEAVIYFKGGLETVAGFFGIKFVQADKLPKQWIALFIDTEKTAYTQQEYEHGSQETAGKFNPPGWDRPYDYGTVAHQEAEPHLFPQKEIKYKFWDLVNAIVIFYIGWEAYKYYKKGGRDFLTLAIFSLLGLIVGVLSFSKFLGVMSMNKFQEANR
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