Scaffold Ga0211578_10009366

Overview

Basic Information

• Taxon OID: 3300020444
• Scaffold ID: Ga0211578_10009366
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3948
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.5319
  • Long. (^o): -159.0668
  • Depth (m): 550

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F013596	Metagenome / Metatranscriptome	270	Y
F016759	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211578_1000936610	F013596	N/A	MEAFAESLTILSIVVSMSVCAVLIARIYRKNSALDPKITNKLRKQQEEYISEVERKNRSLQNKLNSMQKGPVLAETGDLDSVLPELVGQLDGILPKWATKFLKSNPDIVNSVVEYAKSNPDKAKELIGKFVKVGPKAKASEDATLLGL
Ga0211578_100093664	F016759	GAG	MSMEPIQRQMTNPAVGALNTPALLQDTVTNLTFIQLNVPNTILDLYNSPDPAAAADFYTYELQKNSISTGRTFFSTAMSTTSAGRAAVGPIRLASGQLQMSGTPVGAAAPITDQNIVIKFSNGF
Ga0211578_100093665	F007837	N/A	LVSGLSVLPKISARNLNLKLNTVIDLKTTAAALIVNYAASYQSLSNSLLIDNQDAANAVTLRLNRSVNTITIAGGNFRTFNDAWIEQIDLTGPSTNTQVTAQISPLTQISPYGQGVTN