Scaffold Ga0211578_10000280

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211578_10000280

Scaffold Ga0211578_10000280

Overview

Basic Information
Taxon OID	3300020444 Open in IMG/M
Scaffold ID	Ga0211578_10000280 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	24663
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (82.76%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.5319	Long. (^o)	-159.0668	Alt. (m)		Depth (m)	550
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003471	Metagenome / Metatranscriptome	485	Y
F064883	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211578_1000028015	F003471	AGGAG	MAEKNTNQPKPVPVPNTSGYPDKVPNTQTKQMRGTGAATKGTGFSNKSD
Ga0211578_100002809	F064883	GAGG	MDWIIDRFKEPSSYAAAGAAVMGIGMLTGQNWLIMLGIVGGVAGFVLKEKGVI

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