Scaffold Ga0211544_10046501

Overview

Basic Information

• Taxon OID: 3300020443
• Scaffold ID: Ga0211544_10046501
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001179 (ERX556000-ERR598944)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1701
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_152
• Coordinates
  • Lat. (^o): 43.7649
  • Long. (^o): -16.8935
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F016759	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211544_100465014	F016759	AGG	MSMEPIQRLMSNNAAGVAGTPQLLNDQVTGLTFIQLNTPNTILDMFNSPDPAVGNTYQDVLQKNSISTGRTFFTTAMSTTSAGRAAVGPIRLASGQCQFESTLAVGGVATANDNNLVIKFSNGF
Ga0211544_100465015	F007837	AGG	LPKVSARNLSLKLNTVIDLKTTANPLIVNYPAAYQSLAQSILIDNQDAANAVTVRLNRSTNTINIASGNFRAFNDAWIEQIDLTGPSTNTQVTAQISPLTQISPYGQGVTN