Scaffold Ga0211559_10015584

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10015584
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3874
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011841	Metagenome	286	Y
F025996	Metagenome	199	Y
F082390	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1001558412	F025996	AGGAG	MMDRELELSIGEFDRSIIELQKHKFKLLEQVEQINLQISFLRQQQEQLINV
Ga0211559_100155842	F082390	N/A	MQRTMITVNLTEQQLALMEELVGKKFDEVAQAWLPAEETKDMNKLCYDTLLNLRCVRLAKEFDETYANWDKSVWSFDKKEYLRDVGLVTDEELVQQGIC
Ga0211559_100155848	F011841	AGGAG	MEDQIYTEVLKVWNDETPDDFAIFSELYYQMFGGEFEIPYTTQSTTSSFFPYD