Scaffold Ga0211559_10007678

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10007678
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5699
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F038722	Metagenome	165	N
F056669	Metagenome	137	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1000767810	F014114	AGGAG	MKEYKATDPEMIQAQKDLAELSNLSDRIITNDKDLFEELSTIQSKLCQISELKSHFLQRYEDILDEQHNLETQLCVFQHEMLHSFELVFRYYKTKKKGFK
Ga0211559_100076782	F038722	GAGG	MNITESRDEAFEAIAEMLRSNVKKTKIASKLAADYCVSDKTVYKWITKVEEMYDIEPIESILQQQKTELKSEIYQDLIRDYHKAKTDKDDELRRKIGAILNNTYLKKITFN
Ga0211559_100076786	F101298	AGGTGG	MDRDFQKVLQALTVFDKKLSTLEDVVRQLAEANVKYATSQQELNKEQSELNKDLGQGIKMLGDNLAEVIQFLQKIGGNN
Ga0211559_100076788	F056669	N/A	MSLIKSYILSIEEMGYDPYHLNKLSSEEWDNLLTKALKSDRKLYETLLLTRLKLSLKFTDCDLTDTEEPF