Scaffold Ga0211559_10007081

Overview

Basic Information

• Taxon OID: 3300020442
• Scaffold ID: Ga0211559_10007081
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5960
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_140
• Coordinates
  • Lat. (^o): 7.416
  • Long. (^o): 79.3102
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F034139	Metagenome	175	Y
F038722	Metagenome	165	N
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211559_1000708115	F101298	AGGAGG	MDRDFQKVLQALTAFDKKLSTLEDVVKNIAEATANYANSQQNLNKEQSELNKELGEALKFLGENLSQIVKYLKLKEGN
Ga0211559_1000708118	F014114	N/A	MKKYKATDPEMIQAQKDLAKLSNLSDRVISNDKDLFDELSTIQRKLCQISELKAQFLQRYEDILDEQHNLETQLCVFQHEMLHSFELVFRYYKTKKKGFK
Ga0211559_100070815	F034139	AGGA	VNPLSIKLEQIYETLKDFVEKEENLINRWPCDSEYNVPTWNDIYDALEIIDSIINYEPSDAELEAYFNDYQDPPHVRNQQMLEMKSQSHGRRFV
Ga0211559_100070819	F038722	N/A	MNITESRDEAFEAIAEMLRSNIKKTKIASQLAADYCVSDKTVYKWITRVEEMYDIEPIESILQQQKSELKSEIYQDLIRDYHKAKDDKDDELRRKIGAILNNTYLKKITFN