NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10004242

Scaffold Ga0211559_10004242


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10004242 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7872
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049214Metagenome / Metatranscriptome147N
F083393Metagenome / Metatranscriptome113Y
F106168Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_1000424211F083393GGAGMLDKVFKTADKYPLLTLAAGTVGIMYLFERHGQMNGLGNVFKDSGNELDDVFRKTGHTGAPAPGTGRWDTVMPSPSGPQVRYDAKYHTQPFMMDPELEKMLAERGPRPVRQQASVRHGYEPQVFAGINGMKMW
Ga0211559_1000424213F049214N/AMANLNQGYRSGNAFGRLANISYDNGIGGDDVALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTLNVGITAVGSSATPDGSQLATDFDGTHGEALEQYGLASISAYYDLGTGTVAEADKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTLPLQPKFMDAETGDWHSKNAYPPNDTSNGGLPIGFRSNGGTQVAEHITQIGSVSAKLYLKQPSGVSKHTLDEASDGESARATASETALEGISGFLDGEMSPTVNPNWTFGMIIEHGEASLPAFRLVNDSDEYILDGRVRLVGWKYKILELSQEQLSTLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM
Ga0211559_100042429F106168GAGGMKLKTKVKRFYKRNTMLSLGLAAAGAYVLYTRSGMSMPALAPAPVKAQTAMAPTTRYAYDAYPPIRNEPYYDSTHFFGPADGDPVFYGF
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