Basic Information | |
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Taxon OID | 3300020442 Open in IMG/M |
Scaffold ID | Ga0211559_10000120 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 45169 |
Total Scaffold Genes | 77 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 68 (88.31%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_140 | |||||||
Coordinates | Lat. (o) | 7.416 | Long. (o) | 79.3102 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019151 | Metagenome | 231 | Y |
F031530 | Metagenome | 182 | Y |
F054095 | Metagenome | 140 | N |
F076062 | Metagenome | 118 | Y |
F079193 | Metagenome | 116 | Y |
F103392 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211559_1000012022 | F103392 | GGAG | MAKVVIELEFDASNGRKVLNCDVWDYLEELIENESLDYTVHDGDETYGVLDYKEEV |
Ga0211559_1000012023 | F076062 | N/A | MRKVNNNMKIGLDSKYSRRVETPNLKGGKRILMTCGGGMAGSKWYEYATDIDMEGEFVDVLTLSGHSKLLGKNHIVKIEDVDFHGQVLDYEGKVTIEWYDVLKGSEVEYIDTEYTIHGVCLPKPSHSKSLPNYYDNKKVLSFM |
Ga0211559_1000012049 | F054095 | GAGG | MIPQWKMNGKDMRFNGETEIGIVEVRDLFDDLVVTLWVDQEESGSITVKSLGGIGNGRYDVQVVARKKPAEKGEEWKS |
Ga0211559_1000012051 | F019151 | AGGAG | MIVADERAKNGLELFDIDGTESFEMKNETLRMCADEDGSIWYSVRGLTIKDADGNTLFTLSWSENGVCGSLYDDELTVEIEEEF |
Ga0211559_1000012052 | F079193 | AGG | MKTEAVKTIFQSEDYGLEDHTLTVDKIVELDENGNAMVTKLIAYVVDPLGRPLLFHYSPYAPLSELLNSVKVWIQCGCPSDCDEMGFPRKWDEASLHAWVAG |
Ga0211559_1000012055 | F031530 | AGGAG | MQDFVVYKSEAAQGRLVELVQNKHCETYEVIVDGIPVFNCTDYSIAEHEYNMECV |
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