NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211559_10000120

Scaffold Ga0211559_10000120


Overview

Basic Information
Taxon OID3300020442 Open in IMG/M
Scaffold IDGa0211559_10000120 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45169
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (88.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_140
CoordinatesLat. (o)7.416Long. (o)79.3102Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019151Metagenome231Y
F031530Metagenome182Y
F054095Metagenome140N
F076062Metagenome118Y
F079193Metagenome116Y
F103392Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0211559_1000012022F103392GGAGMAKVVIELEFDASNGRKVLNCDVWDYLEELIENESLDYTVHDGDETYGVLDYKEEV
Ga0211559_1000012023F076062N/AMRKVNNNMKIGLDSKYSRRVETPNLKGGKRILMTCGGGMAGSKWYEYATDIDMEGEFVDVLTLSGHSKLLGKNHIVKIEDVDFHGQVLDYEGKVTIEWYDVLKGSEVEYIDTEYTIHGVCLPKPSHSKSLPNYYDNKKVLSFM
Ga0211559_1000012049F054095GAGGMIPQWKMNGKDMRFNGETEIGIVEVRDLFDDLVVTLWVDQEESGSITVKSLGGIGNGRYDVQVVARKKPAEKGEEWKS
Ga0211559_1000012051F019151AGGAGMIVADERAKNGLELFDIDGTESFEMKNETLRMCADEDGSIWYSVRGLTIKDADGNTLFTLSWSENGVCGSLYDDELTVEIEEEF
Ga0211559_1000012052F079193AGGMKTEAVKTIFQSEDYGLEDHTLTVDKIVELDENGNAMVTKLIAYVVDPLGRPLLFHYSPYAPLSELLNSVKVWIQCGCPSDCDEMGFPRKWDEASLHAWVAG
Ga0211559_1000012055F031530AGGAGMQDFVVYKSEAAQGRLVELVQNKHCETYEVIVDGIPVFNCTDYSIAEHEYNMECV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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