Scaffold Ga0211695_10209104

Overview

Basic Information

• Taxon OID: 3300020441
• Scaffold ID: Ga0211695_10209104
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 692
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1885
  • Long. (^o): -43.2831
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024414	Metagenome / Metatranscriptome	206	Y
F054087	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211695_102091041	F024414	AGGAGG	MGTRLKNLIFDRHEDHLYEDERAMRLTPYVMAERCLQVEMSNIYKDYKSGDYDTLTYILEGGFKGYHNMDSSELIDEYKSIEDLW
Ga0211695_102091042	F054087	GGAGG	MPKFRFLADVDSIVEEAEHLESIFEDGIEAESEDEALKIVEKKVKELMYGGPYYTVTDEE