Scaffold Ga0211695_10066368

Overview

Basic Information

• Taxon OID: 3300020441
• Scaffold ID: Ga0211695_10066368
• Source Dataset Name: Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1172
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_078
• Coordinates
  • Lat. (^o): -30.1885
  • Long. (^o): -43.2831
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023122	Metagenome	211	N
F033459	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211695_100663682	F023122	GAG	MAKCPNDKKNLERQVKLRYAVQSGQSSIHGDTNYEISTQEAQSFGFYASTGQGSSSRGGPGTGKHVLYTPGSSTEVLGEGLKVRKPGDISQLPAKIIKAKRGDMIFECENGNIILRAKNIFVDANGGGQDGQFTVKAERLADIGAPDIRLQGEKITAKATKDMTVIARGQFELRYGFMVAASFADANFGALTNNLKKTQLSTQRVL
Ga0211695_100663683	F033459	GAG	MNISRLQTDKIIVGTNDVSYSAPDNSPTGTAVLNGPVYVGKTGASPG