Scaffold Ga0211518_10062116

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10062116
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2090
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028320	Metagenome / Metatranscriptome	192	N
F066583	Metagenome / Metatranscriptome	126	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_100621165	F066583	GGAG	MNKAGEDFENCYVCGTRLKEVTTKRNSQRRCKSCIYHGIGEIKPAVETSDEDDWSVLDDPRAVNEKEYGRVLREPTQMHNGHSSLSSLITGGSSYEHKHGPAREGYRHKRSKKK
Ga0211518_100621166	F096075	GAG	MKSHSKAYYSTQEATELMFGDTPSNRKRLIRLLQNGEVKGKKFGKRWFVYASEINGEGNEQSW
Ga0211518_100621167	F028320	AGGA	MANQYRKVINITLFPNSEGKATHGNSKWTPYKDGNPADIHLRKDARYSVKLFGNDDGSLGLAISEVVQGVYNDSISDGVSQPGMKSLAQSIDPPKPSPISALKDELNDEIPF