Scaffold Ga0211518_10000414

Overview

Basic Information

• Taxon OID: 3300020440
• Scaffold ID: Ga0211518_10000414
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34812
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (76.06%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_025
• Coordinates
  • Lat. (^o): 39.3599
  • Long. (^o): 19.4084
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023319	Metagenome	210	N
F043493	Metagenome / Metatranscriptome	156	Y
F064207	Metagenome	129	Y
F070211	Metagenome	123	Y
F085807	Metagenome	111	N
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211518_1000041417	F043493	AGGA	MATNITSKFSQGTGVIVTTQGDTRILAIHAYSTVTGTFDIEDSEGSKIKFQVAASGQADIYIGELGIKCKGTVSVSSPGANGGVTLIVG
Ga0211518_1000041441	F064207	AGGAG	MQIEKLTKREQLILDFLKDNNVDMAEIIDVIIKVNGFVGVGLVTLEEYIAKAIKKHHKYESLDKIMNG
Ga0211518_1000041444	F105336	AGGAG	VKLTKEQIDKVKQTIADLERKIEEMEQQDYITFDLGKDLQNISYMVDVLKEELKK
Ga0211518_1000041455	F023319	AGGAG	MSKKIKCQKEGCSNKAYPEDMENRASNLLLCDDCYTEIRYLLADYLDIHIQDIKI
Ga0211518_1000041458	F070211	AGGAG	MYDPVVINILEKNVKDLQSQLTNAMKRIKALTDENYKLRRQIGIEKDNGKDIVNNSSGVWLGDAEMPDAGHLKDE
Ga0211518_1000041459	F085807	AGGAG	MTNLWDKDEKRMYRKLFKEYKREGCSNEEARMYAKLDCKNSIGLDIDSAEQLYKDTLEDF